Welcome to the documentation of the wub package!¶
Command line tools¶
- Command line tools
- _template_script
- add_errors
- annotate_length
- bam_accuracy
- bam_alignment_length
- bam_alignment_qc
- bam_alignments_compare
- bam_count_reads
- bam_cov
- bam_fill_unaligned
- bam_frag_coverage
- bam_gc_vs_qual
- bam_multi_qc
- bam_ref_base_coverage
- bam_ref_tab
- bam_score_filter
- bam_soft_clips_tab
- bias_explorer
- calculate_coverage
- compare_genomes_dnadiff
- compare_genomes_lastal
- convert_alphabet
- correlate_counts
- fasta_to_mock_fastq
- fastq_qual_tab
- fastq_time_slice
- fastq_time_tab
- fastx_ends_tab
- fastx_grep
- fastx_length_tab
- length_normalise_counts
- merge_tsvs
- multi_length_hist
- pickle_cat
- plot_counts_correlation
- plot_gffcmp_stats
- plot_qualities
- plot_sequence_properties
- reads_across_time
- reads_stats
- reverse_fastq
- sequence_filter
- sequence_subtract
- simulate_errors
- simulate_genome
- simulate_sequences
- simulate_sequencing_simple
- split_fastx